Deeksha W, Abhishek S, Giri J, Rajakumara E#. Regulation of PARP1 and its apoptotic variant activity by single-stranded DNA (Accepted by FEBS J.)."

Rankawat S, Kundal K, Chakraborty S, Kumar R, Ray S*. A comprehensive rhythmicity analysis of host proteins and immune factors involved in malaria pathogenesis to decipher the importance of the host circadian clock in malaria. Front Immunol. 2023, 14, doi: 10.3389/fimmu.2023.1210299.

Dey S, Pratibha M, Rajakumara E#. Characterization of Host Receptor Interaction with Envelop Protein of Kyasanur Forest Disease Virus and Predicting Suitable Epitopes for Vaccine Candidate (Accepted by J Biomol Struct Dyn).

Nitin K, Rajakumara E#. Binding order and apparent binding affinity in the bisubstrate activity of strictosidine synthase. J Biomol Struct Dyn doi: 10.1080/07391102.2023.2193643 (2023)."

Dagur HS, Behmard E, Rajakumara E#, Barzegari E#. Identifying potent inhibitory phytocompounds from Lagerstroemia speciosa against SARS-Coronavirus-2: Structure-based virtual screening. J Biomol Struct Dyn. (2023) doi: 10.1080/07391102.2023.2205942."

Agarwal M, Sharma A, Kagoo R A,Bhargava A#. Interactions between genes altered during cardiotoxicity and neurotoxicity in zebrafish revealed using induced network modules analysis. Sci Rep. 2023 Apr 17;13(1):6257. doi: 10.1038/s41598-023-33145-8."

Sharma A, Rahman G, Gorelik J, Bhargava A#. Voltage-Gated T-Type Calcium Channel Modulation by Kinases and Phosphatases: The Old Ones, the New Ones, and the Missing Ones. Cells. 2023 Jan 31;12(3):461. doi: 10.3390/cells12030461."

Pullaguri N, Umale A, Bhargava A#. Neurotoxic mechanisms of triclosan: The antimicrobial agent emerging as a toxicant. J Biochem Mol Toxicol. 2023 Feb;37(2):e23244. doi: 10.1002/jbt.23244"

Chakraborty D, Chatterjee S, Althuri A#, Palani SG, Venkata Mohan S Sustainable enzymatic treatment of organic waste in a framework of circular economy. Bioresour Technol. 2023 Feb;370:128487. doi: 10.1016/j.biortech.2022.128487."

Joshi H#, Li CY, Aksimentiev A All-Atom Molecular Dynamics Simulations of Membrane-Spanning DNA Origami Nanopores. Methods Mol Biol. 2023;2639:113-128. doi: 10.1007/978-1-0716-3028-0_7."

Fernandes E Mendonça LM, Joshi AB, Bhandarkar A, Joshi H#, Joshi S Phytoconstituents from Piliostigma foveolatum (Dalzell) Thoth. leaves induce antiproliferative effect, apoptosis, and cell cycle arrest in Hop-62 cells. Nat Prod Res. 2023 Apr 4:1-5. doi: 10.1080/14786419.2023.2197228."

Harne KR, Joshi H#, Wankhade RL. Estimation of evapotranspiration in constructed wetlands under diverse climatic conditions. Environ Monit Assess. 2023 Feb 8;195(3):370. doi: 10.1007/s10661-023-10928-"

Dawes R, Bournazos AM, Bryen SJ, Bommireddipalli S, Marchant RG, Joshi H#, Cooper ST. SpliceVault predicts the precise nature of variant-associated mis-splicing. Nat Genet. 2023 Feb;55(2):324-332. doi: 10.1038/s41588-022-01293-8."

Lee J, Petrosyan S, Khobragade P, Banerjee J, Chien S, Weerman B, Gross A, Hu P, Smith JA, Zhao W, Aksman L, Jain U, Shanthi GS, Kurup R, Raman A, Chakrabarti SS, Gambhir IS, Varghese M, John JP, Joshi H#, Koul PA, Goswami D, Talukdar A, Mohanty RR, Yadati YSR, Padmaja M, Sankhe L, Rajguru C, Gupta M, Kumar G, Dhar M, Jovicich J, Ganna A, Ganguli M, Chatterjee P, Singhal S, Bansal R, Bajpai S, Desai G, Bhatankar S, Rao AR, Sivakumar PT, Muliyala KP, Sinha P, Loganathan S, Meijer E, Angrisani M, Kim JK, Dey S, Arokiasamy P, Bloom DE, Toga AW, Kardia SLR, Langa K, Crimmins EM, Dey AB. Deep phenotyping and genomic data from a nationally representative study on dementia in India. Sci Data. 2023 Jan 20;10(1):45. doi: 10.1038/s41597-023-01941-6."

Ambuj Kumar,* Keerthana Vinod Kumar*, Kavita Kundal, Avik Sengupta, Kunjulakshmi R, Rahul Kumar# (2023) MyeloDB: A multi-omics resource for Multiple Myeloma. bioRxiv"

Keerthana Vinod Kumar*, Ambuj Kumar*, Kavita Kundal, Avik Sengupta, Kunjulakshmi R, Mayilaadumveettil Nishana, Rahul Kumar# (2023) AMLdb: A comprehensive multi-omics platform to understand the pathogenesis and discover biomarkersfor acute myeloid leukemia. bioRxiv doi:"

Ambuj Kumar*, Keerthana Vinod Kumar*, Kunjulakshmi R*, Kavita Kundal, Avik Sengupta, Rahul Kumar# (2023) Advancement of in silico tools for stem cell research (Accepted book chapter in Computational Biology for Stem Cell Research)."

Viswanathan A*, Kundal K*, Sengupta A, Kumar A, Kumar K V, Holmes A B, Kumar R# (2023) Deep learning-based classifier of diffuse large B-cell lymphoma cell-of-origin with clinical outcome. Briefings in Functional Genomics, 22(1):42-48."

Sruthi Sundaresan, Thenmalarchelvi Rathinavelan# SSP: An in silico tool for Salmonella species serotyping using the sequences of O-antigen biosynthesis proteins and H-antigen filament proteins Journal of Molecular Biology ."

Sruthi Sundaresan and Thenmalarchelvi Rathinavelan#, Janardhanaachari Roshini, L Ponoop P. Patro Structural diversity among Acinetobacter baumannii K-antigens and its implication in the in silico serotyping Front. Microbiol., doi: 10.3389/fmicb.2023.1191542"

Chakkarai Sathyaseelan, Murali Aadhitya Magateshvaren Saras, L Ponoop Prasad Patro, Patil Pranita Uttamrao, Thenmalarchelvi Rathinavelan# CoVe-Tracker: An Interactive SARS-CoV-2 Pan Proteome Evolution Tracker Journal of Proteome Research 22 (6), 1984-1996"

Christopher S Campomizzi, Amit Kumar, Patil Pranita Uttamrao, Jack J Stallone, George E Ghanatios, Thenmalarchelvi Rathinavelan#, D Fernando Estrada Active Site Aromatic Residues Play a Dual Role in the Substrate Interaction and Protein Structure in Functional Dimers of CYP121A1 of Mycobacterium tuberculosis ACS Infectious Diseases 9 (4),827-839"

Chakkarai Sathyaseelan, L Ponoop Prasad Patro, Thenmalarchelvi Rathinavelan#. Sequence patterns and HMM profiles to predict proteome wide zinc finger motifs. Pattern Recognition,"

Shaji UP, Tuti N, Das S, Anindya R#, Mohan M Interactions between HIV protease inhibitor ritonavir and human DNA repair enzyme ALKBH2: a molecular dynamics simulation study. Mol Divers. 2023 Apr;27(2):931-938. doi: 10.1007/s11030-022-10444-2"

Anindya R#, Rutter GA, Meur G. New-onset type 1 diabetes and severe acute respiratory syndrome coronavirus 2 infection. Immunol Cell Biol. 2023 Mar;101(3):191-203. doi: 10.1111/imcb.12615."

Richa Ashok Kakkar, Mariam Azeezuddin Haneen, Akash Chandra Parida, and Gaurav Sharma# The Known, Unknown, and the Intriguing about members of a Critically Endangered Traditional Medicinal Plant Genus Aconitum. Frontiers in Plant Sciences. 2023. doi: 10.3389/fpls.2023.1139215"

Declercq M, Treps L, Geldhof V, Conchinha NV, Rooij LD, Abhishek Subramanian, Feyeux M, Cotinat M, Boeckx B, Vinckier S, Dupont L, Vermeulen F, Boon M, Proesmans M, Libbrecht L, Pirenne J, Monbaliu D, Jochmans I, Dewerchin M, Eelen G, Roskams T, Verleden S, Lambrechts D, Carmeliet P, Witters P, "Single cell RNA sequencing of cystic fibrosis liver disease explants revealed alternative complement activation", Journal of Hepatology (submitted), 2023

Mansi Manchanda, Monica Torres, Farydah Inuossa, Ritu Bansal, Rahul Kumar, Matthew Hunt, Craig E Wheelock, Etty Bachar-Wikstrom, Jakob D. Wikstrom (2023) Metabolic reprogramming and reliance in human skin wound healing (Accepted in Journal of Investigative Dermatology). 2023.

Podh N, Das A, Dey P, Paliwal S, Mehta G. Single-molecule tracking dataset of histone H3 (Hht1) in Saccharomyces cerevisiae. .Data in Brief 2023;47:108925. 2023.

Abhishek S, Deeksha W,Rajakumara E#. Mechanistic insights into allosteric regulation of methylated DNA and histone H3 recognition by SRA and SET domains of SUVH5 and the basis for di-methylation of lysine residue. FEBS J. 290(4):1060-1077 (2023). 2023.

Akshit Prajapati, Aditya Srivastava, Sri Amruthaa Sankaranarayanan, Monika Pebam, Hima Sree Buddhiraju, Paloma Patra, Priyanka Yadav, Himanshu Joshi, Aravind Kumar Rengan. "High-Affinity DNA Nanomatrix: A Platform Technology for Synergistic Drug Delivery and Photothermal Therapy. ACS Macro Letters, 2023, 12 (2), 255-262 2023.

Chakraborty S, Kannihalli A, Mohanty A, Ray S*. The promise of proteomics and metabolomics for unraveling the mechanism and side effect landscape of beta-adrenoreceptor antagonists in cardiovascular therapeutics. Omics 2023, 27(3), 87–92. 2023.

Banerjee S, Ray S#. Circadian medicine for aging attenuation and sleep disorders: Prospects and challenges.Prog Neurobiol. 2023, 220, 102387. 2023.

Banerjee S, Chakraborty S, Ray S#. Systems biology of Covid-19 and human diseases: beyond a bird's eye view, and toward One Health. Omics 2023,27(1), 2-5. 2023.

Salim T. Islam, Nicolas Y. Jolivet, Clémence Cuzin, Akeisha M. Belgrav, Laetitia My, Betty Fleuchot, Laura M. Faure, Utkarsha Mahanta, Fares Saïdi, Gaurav Sharma, Jean-Bernard Fiche, Benjamin P. Bratton, Julien Herrou, Marcelo Nollmann, Joshua W. Shaevitz, Eric Durand, Tâm Mignot. Unmasking of the von Willebrand A-domain surface adhesin CglB at bacterial focal adhesions mediates myxobacterial gliding motility.Science Advances. 2023. PDF 2023.

Nirjara Singhvi, Chandni Talwar, Utkarsha Mahanta, Jasvinder Kaur, Krishnendu Mondal, Nabeel Ahmad, Inderjeet Singh, Gaurav Sharma*, Vipin Gupta*. Comparative genomics and integrated system biology approach unveiled undirected phylogeny patterns, mutational hot spots, functional patterns and molecule repurposing for monkey pox virus. bioRxiv. 2023. PDF 2023.

Deeksha W, Abhishek S, Rajakumara E#. PAR recognition by multiple reader domains of PARP1 allosterically regulates the DNA-dependent activities and independently stimulates the catalytic activity of PARP1. BiorXiv. doi: (Under review).

Rajakumara E#, Saniya D, Bajaj P, Rajeshwari R, Giri J, Davari MD. Hijacking Chemical Reactions of P450 Enzymes for Altered Chemical Reactions and Asymmetric Synthesis. Int. J. Mol. Sci. 24(1), 214 (2022)."

Das A, Podh N, Dey P, Paliwal S, Mehta G .Single-Molecule Tracking dataset for histone H3 (Hht1) in yeast Saccharomyces cerevisiae. 2022, V2, doi: Mendeley Data 2022.

Bhargava, A.#, Pullaguri, N., Bhargava, Y. (2022). Zebrafish as a Xenotransplantation Model for Studying Cancer Biology and Cancer Drug Discovery. In: Bhandari, P.R., Bharani, K.K., Khurana, A. (eds) Zebrafish Model for Biomedical Research. Springer, Singapore.

A Kagoo, A Sharma, A Bhargava#. Interactions between genes altered during cardiotoxicity and neurotoxicity in zebrafish revealed using induced network modules analysis. bioRxiv, 2022 - biorxiv.orgBioarxiv"

Bhargava A.#, Gorelik J. (2022) Correlating Cardiac Structure to Function Using Nanoscale Resolution Scanning Ion Conductance Microscopy. In:Bioanalytical Reviews. Springer, Berlin, Heidelberg."

Kumbhakara S, Gupta P, Giri B, Karumbana KS, Muleya A, Misra A#, Maji S*. Photolability of NO in ruthenium nitrosyls with pentadentate ligand induces exceptional cytotoxicity towards VCaP, 22Rv1 and A549 cancer cells under therapeutic condition. Journal of Molecular Structure, 2022"

Raut R*, Gupta P*, Saini T, Mishra P, Misra A#. Src kinase: An attractive therapeutic target for prostate cancer treatment. Protein kinase Inhibitors: From Discovery to Therapeutics, 2022, 479-503.

Karumbana KS, Muleya A, Raut R, Gupta P, Giri B, Kumbhakara S, Misra A#, Maji S*. Mononuclear Co(II) polypyridyl complexes: synthesis, molecular structure, DNA binding/cleavage, radical scavenging, docking studies and anticancer activities. Dalton Transactions, 2022, 51, 7084−7099

Karumbana KS, Raut R, Gupta P, Muleya A, Giri B, Kumbhakara S, Misra A#, Maji S*. Mononuclear cobalt(II) complexes with polypyridyl ligands: synthesis, characterization, DNA interactions and in vitro cytotoxicity towards human cancer cells. Journal of Inorganic Biochemistry, >(2022)

S Datta, M Patel, C Sathyaseelan, D Patel, T Rathinavelan#, U Singh G4 Quadruplex Landscape and its Regulation Revealed by a New Antibody Capture Method Available at SSRN 4145976."

Bharathi,V., Bajpai, A., Parappuram, IT., and Patel, B.K.#, Elevated constitutive expression of Hsp40 chaperone Sis1 reduces TDP-43 aggregation-induced oxidative stress in Ire1 pathway dependent-manner in yeast TDP-43 proteinopathy model of amyotrophic lateral sclerosis. Biochem. Biophys. Res. Commun. (BBRC) 595, 28-34 (2022)."

S Nirwal, P Saravanan, A Bajpai, VD Meshram, G Raju, W Deeksha, Ganesan Prabhushanker, Basant k Patel#. In Vitro Interaction of a C-Terminal Fragment of TDP-43 Protein with Human Serum Albumin Modulates Its Aggregation The Journal of Physical Chemistry B 126 (45), 9137-9151"

Bharathi, V., Girdhar, A., and Patel, B. K#. TDP-43 proteinopathy mechanisms from non-mammalian model systems in “TDP-43 and Neurodegeneration: From bench to bedside” Kumar & Jaiswal Edition. pp 153-181. (Book chapter, 2 Academic Press: Elsevier), 12-820066-7.00002-3 (2022)."

Shaji, U. P., Tuti, N., Das, S., Anindya, R#., & Mohan, M. (2022). Interactions between HIV protease inhibitor ritonavir and human DNA repair enzyme ALKBH2: a molecular dynamics simulation study. Molecular diversity, 10.1007/s11030-022-10444-2."

Pai SS, Ranjan S, Mathew AR, Anindya R#, Meur G Analysis of the long-read sequencing data using computational tools confirms the presence of 5-methylcytosine in the Saccharomyces cerevisiae genome. .Access Microbiol. 2022 Jun 10;4(6):acmi000363. doi: 10.1099/acmi.0.000363"

G.V, Hasan QA, Kumar R , Eranki A*. Analysis of single-nucleotide polymorphisms in genes associated with triple-negative breast cancer. Frontiers in Genetics 2022.

Podh NK, Das A, Dey P, Paliwal S, Mehta G*. Single-Molecule Tracking for studying protein dynamics and target-search mechanism in live cells of S.cerevisiae. STAR Protocols (Cell Press) 2022 (Accepted).

Shwetha S; Subbamanda Y; Pullaguri N, Sharma A, Sahu C, Kumar R, Bhargava A. Isoform-specific expression of T-type voltage-gated calcium channels and estrogen receptors in breast cancer reveals specific isoforms that may be potential targets. Current Research in Biotechnology 2022 (In press).

Bal E, Kumar R , Hadigol M, Holmes A B, Hilton L K, Loh J W, Dreval K, Wong J C H, Vlasevska S, Corinaldesi C, Soni R K, Basso K, Morin R D, Khiabanian H,Pasqualucci L & Dalla-Favera R. Super-enhancer hypermutation alters oncogene expression in B cell lymphoma. Nature 2022, 607, 808–815.

Kumar R* , Deng Y, Fan JB, Wei L. Editorial: Early Detection and Diagnosis of Cancer. Frontiers in Genetics 2022, 13:875421.

Mehta GD*, Sanyal K, Abhishek S, Rajakumara E, Ghosh SK*. Minichromosome maintenance proteins in eukaryotic chromosome segregation. BioEssays 2022; 44(1) (In press).

Negi R, Jena TK, Jyoti, Tuti NK, Anindya R, Khan FA. Solvent controlled synthesis of 2,3-diarylepoxy indenones and α-hydroxy diarylindanones and their evaluation as inhibitors of DNA alkylation repair.Org Biomol Chem. 2022 Jul 27;20(29):5820-5835.

Anindya R, Cytoplasmic DNA in cancer cells: Several pathways that potentially limit DNase2 and TREX1 activities. Biochim Biophys Acta. (2022), 27:119278.

Jie Shen, Arundhati Roy, Himanshu Joshi, Laxmicharan Samineni, Ruijuan Ye, Yu-Ming Tu, Woochul Song, Matthew Skiles, Manish Kumar, Aleksei Aksimentiev, and Huaqiang Zeng. Fluorofoldamer-Based Salt- and Proton-Rejecting Artificial Water Channels for Ultrafast Water Transport. Nano Letters 2022, 22 (12), 4831-4838.

Yi Li, Christopher Maffeo, Himanshu Joshi, Aleksei Aksimentiev, Brice Ménard and Rebecca Schulman Leakless end-to-end transport of small molecules through micron-length DNA nanochannels. Science Advances 8, 2022, eabq4834, Just accepted,

Pratibha, M., Abhishek, S. & Rajakumara, E. Designing ferritin nanocage based vaccine candidates for SARS-CoV-2 by in silico engineering of its MHC I and MHC II epitope peptides. J Biomol Struct Dyn. Jul 27:1-13 (2022).

Satish, M., Kumari, S., Nitin, K., Ninjoor, Y. K., Babu, A., Adiga, S. K., Kalthur, G. & Rajakumara E.Computational, biochemical and ex vivo evaluation of xanthine derivatives against phosphodiesterases to enhance the sperm motility. J Biomol Struct Dyn. Jun 13:1-11 (2022).

Rajakumara, E., Abhishek, S., Nitin, K., Saniya, D., Bajaj, P., Schwaneberg, U. & Davari, M. D.* Structure and Cooperativity in Substrate–Enzyme Interactions: Perspectives on Enzyme Engineering and Inhibitor Design. ACS Chem. Biol. (2022) doi:10.1021/acschembio.1c00500..

Singh, R., Roopmani, P., Chauhan, M., Basu, S. M., Deeksha, W., Kazem, M. D., Hazra, S., Rajakumara E. & Giri, J.* Silver sulfadiazine loaded core-shell airbrushed nanofibers for burn wound healing application. Int. J. Pharm. 613, 121358 (2022)..

A Kagoo, A Sharma, A Bhargava. Interactions between genes altered during cardiotoxicity and neurotoxicity in zebrafish revealed using induced network modules analysis. bioRxiv, 2022 - biorxiv.orgBioarxiv

Narasimha Pullaguri, Andrea R Kagoo, Anamika Bhargava. New insights into inhibitory nature of triclosan on acetylcholinesterase activity. Toxicology Volume 466, 30 January 2022, 153080. doi: 10.1016/j.tox.2021.153080

Banerjee S, Chakraborty S, Ray S. Systems biology of Covid-19 and human diseases: beyond a bird's eye view, and toward One Health. OMICS 2022 (In-press, DOI: 10.1089/omi.2022.0107). *Corresponding author

Jha PK, Valekunja UK, Ray S, Nollet M, Reddy AB. Single-cell transcriptomics and cell-specific proteomics reveal molecular signatures of sleep. Commun Biol. Nature 2022, 5(1):846.

Bhanjadeo, M.M., Nial, P.S.*, Sathyaseelan, C.*, Singh, A.K., Dutta, J., Rathinavelan, T. and Subudhi, U. (2022), “Biophysical interaction between lanthanum chloride and (CG)n or (GC)n repeats: A reversible B-to-Z DNA transition”, (2022) Int. J. Biol. Marcomol.

Murali Aadhitya M.S., Patro, L.P.P.*, Uttamrao, P.P.* and Rathinavelan, T. SARS-CoV-2 whole proteome sequences from environment as an indicator of community viral distribution, evolution, and epidemiological dynamics: A cohort analysis of Austria 2022 Environmental Microbiology Reports

Murali Aadhitya, M.S., Patro, L.P.P.*, Uttamrao, P.P,* and Rathinavelan, T. Geographical distribution of SARS-CoV-2 amino acids mutations and the concomitant evolution of seven distinct clades in non-human hosts” 2022 Zoonoses and Public Health

Patro, L.P.P. and Rathinavelan, T. “STRIDER: Steric hindrance and metal coordination identifier” 2022 Comp. Bio. and Chem, 107686

Satish M, Kumari S, Deeksha W, Abhishek S, Nitin K, Adiga SK, Hegde P, Dasappa JP, Kalthur G#, Rajakumara E#. Structure-based redesigning of pentoxifylline analogs against selective phosphodiesterases to modulate sperm functional competence for assisted reproductive technologies, Nature Scientific Reports 11(1):12293 (2021)."

Abhishek S, Deeksha W, Rajakumara E#. Helical and β-Turn Conformations in the Peptide Recognition Regions of the VIM1 PHD Finger Abrogate H3K4 Peptide Recognition. Biochemistry. 60(35):2652-2662 (2021). (Journal Cover-page)."

Althuri A#, Venkata Mohan S Emerging innovations for sustainable production of bioethanol and other mercantile products from circular economy perspective. Bioresour Technol. 2022 Nov;363:128013. doi: 10.1016/j.biortech.2022.128013."

N Pullaguri, A Kagoo, A Bhargava#. Antimicrobial Agent Triclosan Inhibits Acetylcholinesterase Activity in Vitro in a Dose-Dependent Manner. bioRxiv, 2021. doi:"

Manohar K, Gupta RK, Gupta P, Saha D, S Gare, Sarkar R, Misra A#, Giri L. FDA approved L-type channel blocker Nifedipine reduces cell death in hypoxic A549 cells through modulation of mitochondrial calcium and superoxide generation. Free Radical Biology & Medicine. Dec 2021; 177, 189-200

Muleya A, Karumbana KS, Gupta P, Kumbhakara S, Giri B, Raut R, Misra A#, Maji S*. Synthesis, structure, spectro-electrochemical aspects and anticancer activity of Ruthenium (II) arene complexes with substituted triazole ligands. Journal of Organometallic Chemistry. 2021, Dec 1; 954−955,122074

Puppala A, Rankawat S, Ray S*. Circadian Timekeeping in Anticancer Therapeutics: An Emerging Vista of Chronopharmacology Research. Curr Drug Metab. 2021, 22, 998-1008.

Bharathi, V, Manglunia RR, Sharma N, Nirwal S., and Patel B. K#. Pharmaceutical acetylation of HSA modulates its amyloidogenicity. Ind. J Biochem. Biophys Vol. 58, August, pp. 343-350 (2021)."

Sadhana Nirwal, Vidhya Bharathi and Basant K Patel# Amyloid-like aggregation of bovine serum albumin at physiological temperature induced by crossseeding effect of HEWL amyloid aggregates.. Biophys. Chem. 278, 106678 (2021) DOI: 10.1016/j.bpc.2021.106678"

MLY Bangaru, RK Medabalimi, S Babu, NK Raghavendra# REMP software to introduce a screening REstriction site in site-directed Mutagenesis Primer SoftwareX 16, 100881"

Ajjugal, Y. and T.Rathinavelan#. (2021) Conformational distortions induced by periodically recurring A...A in d(CAG).d(CAG) provide stereochemical rationale for the trapping of MSH2.MSH3 in polyQ disorders. Comput Struct Biotechnol J.,"

Patro, L.P.P.*, Sathyaseelan, C.*, Uttamrao, P.P.* and Rathinavelan, T#. (2021), Global variation in SARS-CoV-2 proteome and its implication in pre-lockdown emergence and dissemination of 5 dominant SARS-CoV-2 clades . Infection, Genetics and Evolution.,"

Patro, L.P.P.*, Sathyaseelan, C.*, Uttamrao, P.P.* and Rathinavelan, T#. (2021), The evolving proteome of SARS-CoV-2 predominantly uses mutation combination strategy for survival. Comput Struct Biotechnol J., doi: 10.1016/j.csbj.2021.05.054."

P. P. Uttamrao, C. Sathyaseelan*, L. P. P. Patro*, T. Rathinavelan# (2021), Revelation of potent epitopes present in unannotated ORF antigens of SARS-CoV-2 using immunoinformatics approach for the polyvalent epitope vaccine design. Frontiers in Immunology,"

Lordan R, Rando HM; COVID-19 Review Consortium; Greene CS. Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment. mSystems. 2021 May 4;6(3):e00122-21. doi: 10.1128/mSystems.00122-21."

Rando HM, MacLean AL, Lee AJ, Lordan R, Ray S#, et al., Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through analysis of Viral Genomics and Structure. mSystems 2021, 6 (5), e00095-21."

Puppala A, Rankawat S, Ray S#. Circadian Timekeeping in Anticancer Therapeutics: An Emerging Vista of Chronopharmacology Research. Curr Drug Metab. 2021, 22, 998-1008."

Shruta Sandesh Pai, Aimee Rachel Mathew, Anindya R# A comparative analysis of computational tools for the prediction of epigenetic DNA methylation from long-read sequencing data. bioRxiv 2021.04.24.441281; doi:* corresponding author"

Unnikrishnan Paruthiyezhath Shaji , Nikhil Tuti , Susmita Das , Roy Anindya#, Monisha Mohan Interactions between HIV protease inhibitor ritonavir and human DNA repair enzyme ALKBH2: a molecular dynamics simulation study. Mol Divers 2023 Apr;27(2):931-938. doi: 10.1007/s11030-022-10444-2"

Rando HM, MacLean AL, Lee AJ, Lordan R, Ray S, et al., Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through analysis of Viral Genomics and Structure. mSystems 2021, 6 (5), e00095-21.

Podh NK, Paliwal S, Dey P, Morjaria S, Das A, Mehta GD*. In-vivo single-molecule imaging in yeast: Applications and Challenges. Journal of Molecular Biology 2021; 433(22):167250.

Nigam R, Raveendra Babu K, Ghosh T, Kumari B, Das P, Anindya R, Ahmed Khan F. Synthesis of 2-Chloro-3-amino indenone derivatives and their evaluation as inhibitors of DNA dealkylation repair. Chem Biol Drug Des. 2021 Jun;97(6):1170-1184. doi: 10.1111/cbdd.13839.

Khadake SN, Karamathulla S, Jena TK, Monisha M, Tuti NK, Khan FA, Anindya R. Synthesis and antibacterial activities of marine natural product ianthelliformisamines and subereamine synthetic analogues. Bioorg Med Chem Lett. 2021 May 1;39:127883. doi: 10.1016/j.bmcl.2021.127883.

Bharathi V, Girdhar A, Patel BK. Role of CNC1 gene in TDP-43 aggregation-induced oxidative stress-mediated cell death in S. cerevisiae model of ALS. Biochim Biophys Acta Mol Cell Res. 2021 May;1868(6):118993. doi: 10.1016/j.bbamcr.2021.118993.

Sathyaseelan C, Vijayakumar V, Rathinavelan T. CD-NuSS: A Web Server for the Automated Secondary Structural Characterization of the Nucleic Acids from Circular Dichroism Spectra Using Extreme Gradient Boosting Decision-Tree, Neural Network and Kohonen Algorithms J Mol Biol. 2021 May 28;433(11):166629. doi: 10.1016/j.jmb.2020.08.014.

Mohan M, Hussain MA, Khan FA, Anindya R. Symmetrical and un-symmetrical curcumin analogues as selective COX-1 and COX-2 inhibitor. Eur J Pharm Sci. 2021 May 1;160:105743. doi: 10.1016/j.ejps.2021.105743.

Ajjugal Y, Kolimi N, Rathinavelan T. Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS. Sci Rep. 2021 Apr 14;11(1):8163. doi: 10.1038/s41598-021-87097-y.

Preethi S, Bharathi V, Patel BK. Zn2+ modulates in vitro phase separation of TDP-432C and mutant TDP-432C-A315T C-terminal fragments of TDP-43 protein implicated in ALS and FTLD-TDP diseases. Int J Biol Macromol. 2021 Apr 15;176:186-200. doi: 10.1016/j.ijbiomac.2021.02.054.

Pullaguri N, Grover P, Abhishek S, Rajakumara E, Bhargava Y, Bhargava A. Triclosan affects motor function in zebrafish larva by inhibiting ache and syn2a genes. Chemosphere. 2021 Mar;266:128930. doi: 10.1016/j.chemosphere.2020.128930.

Ajjugal Y, Rathinavelan T. Sequence dependent influence of an A…A mismatch in a DNA duplex: An insight into the recognition by hZαADAR1 protein. J Struct Biol. 2021 Mar;213(1):107678. doi: 10.1016/j.jsb.2020.107678.

Yadav PR, Hussain Basha S, Satyanarayana SDV, Pindi PK. Microsecond simulation analysis of carbonic anhydrase - II in complex with (+)-cathechin revealed molecular interactions responsible for its amelioration effect on fluoride toxicity. J Biomol Struct Dyn. 2021 Mar 15:1-14. doi: 10.1080/07391102.2021.1898471.

Ajjugal Y, Tomar K, Rao DK, Rathinavelan T. Spontaneous and frequent conformational dynamics induced by A…A mismatch in d(CAA)·d(TAG) duplex. Sci Rep. 2021 Feb 11;11(1):3689. doi: 10.1038/s41598-021-82669-4.

Abhishek S, Nakarakanti NK, Deeksha W, Rajakumara E. Mechanistic insights into recognition of symmetric methylated cytosines in CpG and non-CpG DNA by UHRF1 SRA. Int J Biol Macromol. 2021 Feb 15;170:514-522. doi:10.1016/j.ijbiomac.2020.12.149.

Akula D, O'Connor TR, Anindya R. Oxidative demethylase ALKBH5 repairs DNA alkylation damage and protects against alkylation-induced toxicity. Biochem Biophys Res Commun. 2021 Jan 1;534:114-120. doi: 10.1016/j.bbrc.2020.12.017.

Ch R, Rey G, Ray S, Jha PK, Driscoll PC, Dos Santos MS, Malik DM, Lach R, Weljie AM, MacRae JI, Valekunja UK, Reddy AB. Rhythmic glucose metabolism regulates the redox circadian clockwork in human red blood cells. Nat Commun. 2021 Jan 15;12(1):377. doi: 10.1038/s41467-020-20479-4.

Pullaguri, N., Nema, S., Bhargava, Y., & Bhargava, A. (2020) Triclosan alters adult zebrafish behavior and targets acetylcholinesterase activity and expression. Environmental Toxicology and Pharmacology, 75, 103311. https://

Akila M, Rajakumara E, Qureshi A#. Ambient concentration of airborne microbes and endotoxins in rural households of southern India. Building and Environment 179, 106970 (2020)."

B Giri, T Saini, S Kumbhakar, A Muley, A Misra#>, S Maji*. Near-IR light-induced photorelease of nitric oxide (NO) on ruthenium nitrosyl complexes: formation, reactivity, and biological effects. Dalton Transactions. 2020 49 (31), 10772-10785"

Patro, L.P.P., and Rathinavelan, T#. (2020), STRIDER: Steric hindrance estimator . BioRxiv., 2020.02. 07.931550."

Girdhar A, Bharathi V, Tiwari VR, Abhishek S, Deeksha W, Mahawar US, Raju G, Singh SK, Prabusankar G, Rajakumara E, Patel BK. Computational insights into mechanism of AIM4-mediated inhibition of aggregation of TDP-43 protein implicated in ALS and evidence for in vitro inhibition of liquid-liquid phase separation (LLPS) of TDP-432C-A315T by AIM4. Int J Biol Macromol. 2020 Mar 15;147:117-130. doi: 10.1016/j.ijbiomac.2020.01.032.

Anindya R. Single-stranded DNA damage: Protecting the single-stranded DNA from chemical attack. DNA Repair (Amst). 2020 Mar;87:102804. doi: 10.1016/j.dnarep.2020.102804.

Yadav PR, Basha SH, Pindi PK. Role of Thr199 residue in human β-carbonic anhydrase-II pH-dependent activity elucidated by microsecond simulation analysis. J Biomol Struct Dyn. 2020 Dec 24:1-10. doi: 10.1080/07391102.2020.1865203.

Kumari N, Bhargava A, Rath SN. T-type calcium channel antagonist, TTA-A2 exhibits anti-cancer properties in 3D spheroids of A549, a lung adenocarcinoma cell line. Life Sci. 2020 Nov 1;260:118291. doi: 10.1016/j.lfs.2020.118291.

Patro LPP, Sudhakar KU, Rathinavelan T. K-PAM: a unified platform to distinguish Klebsiella species K- and O-antigen types, model antigen structures and identify hypervirulent strains. Sci Rep. 2020 Oct 7;10(1):16732. doi: 10.1038/s41598-020-73360-1.

Rajakumara E, Satish M, Abhishek S. In vitro studies on non-canonical DNA binding specificities of KAP6 and HMO1 and mechanistic insights into DNA bound and unbinding dynamics of KAP6. Int J Biol Macromol. 2020 Oct 1;160:925-933. doi: 10.1016/j.ijbiomac.2020.05.228.

Gaur, H., & Bhargava, A. (2019). Glyphosate induces toxicity and modulates calcium and NO signaling in zebrafish embryos. Biochemical and Biophysical Research Communications, 513(4), 1070–1075.

Bhargava A, Saha S. (2019). T-Type voltage gated calcium channels: a target in breast cancer?. Breast Cancer Res Treat. Jan;173(1):11-21. DOI: 10.1007/s10549-018-4970-0

Abhishek, S., Sivadas, S., Satish, M., Deeksha, W., & Rajakumara, E. (2019). Dynamic Basis for Auranofin Drug Recognition by Thiol-Reductases of Human Pathogens and Intermediate Coordinated Adduct Formation with Catalytic Cysteine Residues. ACS Omega, 4(5), 9593–9602.

Patro,L.P.P.,&Rathinavelan,T. (2019). Targeting the Sugary Armor of Klebsiella Species. Frontiers in Cellular and Infection Microbiology,

Tufegdzic Vidakovic, A., Harreman, M., Dirac-Svejstrup, A. B., Boeing, S., Roy, A., Encheva, V., Neumann, M., Wilson, M., Snijders, A. P., & Svejstrup, J. Q. (2019). Analysis of RNA polymerase II ubiquitylation and proteasomal degradation. Methods, 159–160, 146–156.

Mohan, M., Akula, D., Dhillon, A., Goyal, A., & Anindya, R. (2019). Human RAD51 paralogue RAD51C fosters repair of alkylated DNA by interacting with the ALKBH3 demethylase. Nucleic Acids Research, 47(22), 11729–11745.

Archana Prasad, Vidhya Bharathi, Vishwanath Sivalingam, Amandeep Girdhar and Basant K Patel. Molecular mechanism of TDP-43 misfolding and pathology in Amyotrophic Lateral Sclerosis. Front Mol Neurosci. Vol 12, 2019, 25

Uzma Hasan and Sandeep K. Singh. The Astrocyte–Neuron Interface: An Overview on Molecular and Cellular Dynamics Controlling Formation and Maintenance of the Tripartite Synapse. 2019, Methods in Molecular Biology (Astrocytes), 1938:3-18

R. Nigam, R. Anindya#, Escherichia coli single-stranded DNA binding protein SSB promotes AlkB-mediated DNA dealkylation repair, Biochem Biophys Res Commun 496(2) (2018) 274-279."

Bhargava A# and Saha S. T-Type voltage gated calcium channels: a target in breast cancer? Breast Cancer Res Treat. 2018 Sep 21. doi:10.1007/s10549-018-4970-0."

Gaur H, Pullaguri N, Nema S, Purushothaman S, Bhargava Y, Bhargava A#. ZebraPace: An Open-Source Method for Cardiac-Rhythm Estimation in Untethered Zebrafish Larvae. Zebrafish. 2018 Jun;15(3):254-262."

Neema Kumari, Himanshu Gaur, Anamika Bhargava#. Cardiac voltage gated calcium channels and their regulation by β-adrenergic signaling. Volume 194, 1 February 2018, Pages 139–149."

Bhargava Anamika#, Gorelik J. (2018) Studying Structure and Function of the Heart Cells Using Scanning Ion Conductance Microscopy. In: Kaestner L., Lipp P. (eds) Microscopy of the Heart. Springer, Cham."

Verma, M., Girdhar, A., Patel, B.#, Ganguly, N.K., Kukreti, R., and Taneja, V Q-Rich Yeast Prion [PSI+] Accelerates Aggregation of Transthyretin, a Non-Q-Rich Human Protein.. Front Mol Neurosci. 11:75. (2018) doi: 10.3389/fnmol.2018.00075."

R. Nigam, R. Anindya#, Escherichia coli single-stranded DNA binding protein SSB promotes AlkB-mediated DNA dealkylation repair, Biochem Biophys Res Commun 496(2) (2018) 274-279."

George A, Gopi Krishna Reddy A, Satyanarayana G, Raghavendra NK# 1,2,3,4-Tetrahydroisoquinolines as inhibitors of HIV-1 integrase and human LEDGF/p75 interaction. Chem Biol Drug Des. 2018 Jun;91(6):1133-1140. doi: 10.1111/cbdd.13175."

Gaur H, Purushothaman S, Pullaguri N, Bhargava Y, Bhargava A. Sodium benzoate induced developmental defects, oxidative stress and anxiety-like behaviour in zebrafish larva. Biochem Biophys Res Commun. 502, 2018, 364-369.

M Sharma, D Akula, M Mohan, R Nigam, M Das, Anindya Roy. Heteroexpression of Mycobacterium leprae hypothetical protein ML0190 provides protection against DNA-alkylating agent methyl methanesulfonate. Biochemical & Biophysical Research Communications, 509(3), 2018, 779-783.

G.S. Tomar, G.P. Singh, D. Lahkar, K. Sengar, R. Nigam, M. Mohan, Anindya Roy. New biomarkers in brain trauma. Clinica Chimica Acta, 487, 2018, 325-329.

G.P. Singh, R. Nigam, G.S. Tomar, M. Monisha, S.K. Bhoi, A. S, K. Sengar, D. Akula, P. Panta, Anindya Roy. Early and rapid detection of UCHL1 in the serum of brain-trauma patients: a novel gold nanoparticle-based method for diagnosing the severity of brain injury. Analyst, 143(14), 2018, 3366-3373.

M. Sharma, M. Das, D. Diana, A. Wedderburn, Anindya Roy. Identification of novel open reading frames in the intergenic regions of Mycobacterium leprae genome and detection of transcript by qRT-PCR. Microbial Pathogenesis, 124, 2018, 316-321.

R. Nigam, M. Mohan, G. Shivange, P.K. Dewangan, Anindya Roy. Escherichia coli AlkB interacts with single-stranded DNA binding protein SSB by an intrinsically disordered region of SSB. Molecular Biology Reports 45(5), 2018, 865-870.

R. Nigam, K.R. Babu, T. Ghosh, B. Kumari, D. Akula, S.N. Rath, P. Das, Anindya Roy. F.A. Khan, Indenone derivatives as inhibitor of human DNA dealkylation repair enzyme AlkBH3. Bioorganic & Medicinal Chemistry, 26(14), 2018, 4100-4112.

M. Mohan, V. Pandya, Anindya Roy. Escherichia coli AlkB and single-stranded DNA binding protein SSB interaction explored by Molecular Dynamics Simulation. Journal of Molecular Graphics & Modeling, 84, 2018, 29-35.

R. Nigam, M. Mohan, Anindya Roy. Escherichia coli single-stranded DNA binding protein SSB binds to AlkB and promotes DNA repair. FEBS Open Bio, 8, 2018, 28135.

A. Deepa, K. Naveena, R. Anindya#, DNA repair activity of Fe(II)/2OG-dependent dioxygenases affected by low iron level in Saccharomyces cerevisiae, FEMS Yeast Res 18(2) (2018)."

Archana Prasad, Vishwanath Sivalingam, Vidhya Bharathi, Amandeep Girdhar, and Basant K Patel. The amyloidogenicity of a C-terminal region of TDP-43 implicated in Amyotrophic Lateral Sclerosis can be affected by anions, acetylation and homodimerization. Biochimie Vol 150, 2018, 76-87.

Anamika Bhargava, Julia Gorelik. Studying Structure and Function of the Heart Cells Using Scanning Ion Conductance Microscopy. In: Kaestner L., Lipp P. (eds) Microscopy of the Heart. Springer, Cham, 2018

Abhishek S, Nivya MA, Nakarakanti NK, Deeksha W, Khosla S, Rajakumara E. Biochemical and dynamic basis for combinatorial recognition of H3R2K9me2 by dual domains of UHRF1. Biochimie 149, 105-1142018 (2018): doi: 10.1016/j.biochi.2018.04.010.

Satish, M., Nivya, MA., Abhishek, S., Nakarakanti, NK., Shivani, D., M. Vani, V., Rajakumara, E. Computational characterization of substrate and product specificities, and functionality of SAM binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize. Proteins: Structure, Function, and Bioinformatics. 2018 Jan;86(1):21-34. doi: 10.1002/prot.25399.

Schobesberger S, Wright P, Tokar S, Bhargava A#, Mansfield C, Glukhov AV, Poulet C, Buzuk A, Monszpart A, Sikkel M, Harding SE, Nikolaev VO, Lyon AR, Gorelik J. T-tubule remodelling disturbs localized β2-adrenergic signalling in rat ventricular myocytes during the progression of heart failure. Cardiovasc Res. 2017 Jun 1;113(7):770-782

Yogesh Bhargava and Anamika Bhargava#. ZebraTrack: An Automated Method to Study Zebrafish Behaviour. LAP LAMBERT Academic Publishing (February 9, 2017). ISBN-10: 3659900516."

Alexey V. Glukhov, Anamika Bhargava# and Julia Gorelik. Distribution and Regulation of L-type Ca2+ channels in cardiomyocyte microdomains. Microdomains in the cardiovascular system. Cardiac and vascular biology. Springer international publishing. August 2017 ISSN: 2509-7830."

R. Anindya, Non-hemedioxygenases in tumor hypoxia: they’re all bound with the same fate, DNA Repair, 49, 21-25 (2017).

Misra A# and Green MR*. Fluorescence reporter-based genome-wide RNA interference screening to identify alternative splicing regulators. Methods in Molecular Biology 2017,1507:1-12"

Bharathi, V., Girdhar, A., and Patel, B.K#. A Protocol of Using White/Red Color Assay to Measure Amyloid-induced Oxidative Stress in Saccharomyces cerevisiae. Bio-protocol Vol 7(15), DOI:10.21769/BioProtoc.2440 (2017)."

Park, S.K., Hong, J.Y., Arslan, F., Kanneganti, V., Patel, B.#, Tietsort, A., Tank, E.M.H., Li, X., Barmada, S.J., and Liebman, S.W. Overexpression of the essential Sis1 chaperone reduces TDP-43 effects on toxicity and proteolysis. PLOS Genet. 22;13(5): e1006805 (2017) doi: 10.1371/journal.pgen.1006805."

George A, Raghavendra NK#. L368F/V408F double mutant of IBD of LEDGF/p75 retains interaction with M178I mutant of HIV-1 integrase. Biochem Biophys Res Commun. 2017 Aug 19;490(2):271-275. doi: 10.1016/j.bbrc.2017.06.035."

Mukul Sharma , Sundeep Chaitanya Vedithi , Madhusmita Das, Anindya Roy#, Mannam Ebenezer Sequence homology and expression profile of genes associated with DNA repair pathways in Mycobacterium leprae Int J Mycobacteriol. 2017 Oct-Dec;6(4):365-378. doi: 10.4103/ijmy.ijmy_111_17."

S. Sachdeva, R. V. Palur, K. U. Sudhakar, and T. Rathinavelan, E. coli group I capsular polysaccharide exportation nanomachinary as a plausible antivirulent target in the perspective of emerging antimicrobial resistance, Frontiers in Microbiology, 8-70 (2017) 10.3389/fmicb.2017.00070.

Patro, L.P.P., Kumar, A.*, Kolimi, N.* and Rathinavelan, T. (2017), “3D-NuS: A Web Server for Automated Modeling and Visualization of non-canonical 3-Dimensional Nucleic Acid Structures”. J. Mol. Biol. 429, 2438-2448.

Kolimi, N.*, Ajjugal. Y* and Rathinavelan, T. (2017), “A B–Z junction induced by an A...A mismatch in GAC repeats in the gene for cartilage oligomeric matrix protein promotes binding with the hZaADAR1 protein”. Accepted in J. Biol. Chem. 10.1074/jbc.M117.796235

Rajakumara E#, Nakarakanti NK, Nivya MA and Satish, M. Mechanistic insights into the recognition of 5-methylcytosine oxidation derivatives by the SUVH5 SRA domain. Scientific Reports. 6: 2016 (2016)."

Miragoli M, Sanchez-Alonso JL, Bhargava A#, Wright PT, Sikkel M, Schobesberger S, Diakonov I, Novak P, Castaldi A, Cattaneo P, Lyon AR, Lab MJ, Gorelik J. Microtubule-Dependent Mitochondria Alignment Regulates Calcium Release in Response to Nanomechanical Stimulus in Heart Myocytes. Cell Rep. 2016 Jan 5;14(1):140-51."

R. Kumari, S. Singh, M. Monisha, S. Bhowmick, R. Anindya#, N. Das, P. Das, Hierarchical coassembly of DNA-triptycene hybrid molecular building blocks and zinc protoporphyrin IX, Beilstein J Nanotechnol 7 (2016) 697-707."

Misra A#, Green MR*. From polyadenylation to splicing: Dual role for mRNA 3’ end formation factors. RNA Biology 2016, 13(3):259-64"

A. Prasad, G. Raju, V. Sivalingam, A. Girdhar, M. Verma, A. Vats, V. Taneja, Ganesan Prabusankar, and Basant K. Patel, An acridine derivative, [4,5-bis{(N-carboxy methyl imidazolium) methyl}acridine] dibromide, shows anti-TDP-43 aggregation effect in ALS disease models, Scientific Reports, 6, 39490 (2016).

G. Goldsmith, T. Rathinavelan, and N. Yathindra, Selective Preference of Parallel DNA Triplexes is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity Between the G*GC and T*AT triplets, PLoS One, 11(3), e0152102 (2016).

V. Sivalingam, N.L. Prasanna, N. Sharma, A. Prasad, and Basant K. Patel, Wild-type hen egg white lysozyme aggregation in vitro can form selfseeding amyloid conformational variants, Biophys Chem., 219, 28-37 (2016).

V. Bharathi, A. Girdhar, A. Prasad, M. Verma, V. Taneja, and Basant K. Patel, Use of ade1 and ade2 mutations for development of a versatile red/white colour assay of amyloid-induced oxidative stress in Saccharomyces cerevisiae, Yeast., 33(12), 607-620 (2016).

V. Sivalingam and Basant K. Patel, Familial mutations in fibrinogen A-alpha (FGA) chain identified in renal amyloidosis increase in vitro amyloidogenicity of FGA fragment, Biochimie, 127, 44-49 (2016).

N. Sharma, V. Sivalingam, and Basant K. Patel, Recombinant Human Semenogelin-1 (Sg1) and Sg1 (1-159) form Detergent Stable Amyloid like Aggregates in vitro, Protein & Peptide letters, 23(1), 87-96 (2016).

G. Raju, V. Sivalingam, Archana, Basant K. Patel and Ganesan Prabusankar, Imidazolium Tagged Acridine Derivatives: Syntheses, Structures, DNA Sensing and Anti-microbial Activities, Journal of Molecular Structure, 1107, 291-299 (2016).

G. Shivange, M. Monisha, R. Nigam, N. Kodipelli, R. Anindya, RecA stimulates AlkB-mediated direct repair of DNA adducts, Nucleic Acid Research, 44, 8754-63 (2016).

S. Sachdeva, N. Kolimi, S.A. Nair, and T. Rathinavelan, Key Diffusion Mechanisms Involved in Water Conduction of Wzi, Sci. Rep., 28157, (2016) 10.1038/srep28157.

A.Bhargava, T. O’Hara, A.V. Glukhov, S. Schobesberger, N. Bhogal, M.B. Sikkel, C. Mansfield, Y.E. Korchev, A.R. Lyon, P.P. Punjabi, V.O. Nikolaev, N.A. Trayanova, and Gorelik, Microdomain-Specific Modulation of L-Type Calcium Channels Leads to Triggered Ventricular Arrhythmia in Heart Failure, JL Sanchez-Alonso, J.Circ Res. Sep 30;119(8), 944- 55 (2016).

S. Nema, W. Hasan, A. Bhargava, and Y. Bhargava, A novel method for automated tracking and quantification of adult zebrafish behaviour during anxiety, J Neurosci Methods, Sep 15; 271, 65-75 (2016).

Kunduru, B.R.*, Nair, S.N.* and Rathinavelan, T#. (2016), EK3D: an E. coli K antigen 3-Dimensional Structure Database, Nucleic Acids Res. 44 (D1), D675-D681"

Rajakumara, E#., Nakarakanti, N.K, Nivya, M.A. and Satish, M. Mechanistic insights into the recognition of 5-methylcytosine oxidation derivatives by the SUVH5 SRA domain. Nature Scientific Reports. 2016 Feb 4;6:20161. doi: 10.1038/srep20161.(# Corresponding author)

V. Singh, M. Monisha, R. Anindya#, P. Das, Self assembled nanocages from DNA–protoporphyrin hybrid molecules, RSC Advance 5(108) (2015) 89025-89029."

Sharma, N., Sivalingam, V., Maurya, S., Prasad, A., Khandelwal, P., Yadav, S.C., and Patel, B.K#. New insights into in vitro amyloidogenic properties of Human serum albumin suggest considerations for therapeutic precautions. FEBS letters, 589, 4033-4038 (2015)."

G. Shivange, N. Kodipelli, R. Anindya#, 2-Hydrazinobenzothiazole-based etheno-adduct repair protocol (HERP): a method for quantitative determination of direct repair of etheno-bases, DNA Repair (Amst) 28 (2015) 8-13."

N. Khan, N. Kolimi, T. Rathinavelan, ‘Twisting right to left: A…A mismatch in a CAG trinucleotide repeat overexpansion provokes left-handed Z-DNA conformation’, PLoS Comput Biol., 11, e1004162, 2015.

Devi, S., Rajakumara, E., Ahmed N. Induction of Mincle by Helicobacter pylori and consequent anti-inflammatory signaling denote a bacterial survival strategy. Nature Scientific Reports. 2015 Oct 12;5:15049. doi: 10.1038/srep15049.

Glukhov AV, Balycheva M, Sanchez- Alonso JL, Ilkan Z, Alvarez-Laviada A, Bhogal N, Diakonov I, Schobesberger S, Sikkel MB, Bhargava A, Faggian G, Punjabi PP, Houser SR, Gorelik, Direct Evidence for Microdomain-Specific Localization and Remodeling of Functional L-Type Calcium Channels in Rat and Human Atrial Myocytes, J. Circulation. 5 Dec 22;132(25):2372-84. (2015)

Glukhov AV, Rosenshtraukh LV, Bhargava A, Miragoli M, Boukens BJ, Atrial Fibrillation: Biophysics, Molecular Mechanisms and Novel Therapies, Editorial. Biomed Res Int. 2015:780671. (2015)

S. Agarwal, P Mishra, G Shivange, N Kodipelli, M Moros M, JM de la Fuente, R Anindya, ‘Citrate-capped gold nanoparticles for the label-free detection of ubiquitin C-terminal hydrolase-1’, Analyst., 140: 1166-73, 2015.

V. Gonzalez-Huici, B. Szakal, M. Urulangodi, I. Psakhye, F. Castellucci, D. Menolfi, E. Rajakumara, M. Fumasoni, R. Bermejo, S. Jentsch, D. Branzei, EMBO J, DNA bending facilitates the error-free DNA damage tolerance pathway and upholds genome integrity, 33(4), 327-40 (2014).

S. Agarwal, P. Mishra, G. Shivange, N. Kodipelli, M. Moros, J.M. de la Fuente, R. Anindya#, Citrate-capped gold nanoparticles for the label-free detection of ubiquitin C-terminal hydrolase-1, Analyst 140(4) (2015) 1166-73."

F.A. Khan, S. Ahmad, N. Kodipelli, G. Shivange, R. Anindya#, Syntheses of a library of molecules on the marine natural product ianthelliformisamines platform and their biological evaluation, Org Biomol Chem 12(23) (2014) 3847-65."

G. Shivange, N. Kodipelli, R. Anindya#, A nonradioactive restriction enzyme-mediated assay to detect DNA repair by Fe(II)/2-oxoglutarate-dependent dioxygenase, Anal Biochem 465 (2014) 35-7."

G. Shivange, N. Kodipelli, M. Monisha, R. Anindya, ‘A Role for Saccharomyces cerevisiae Tpa1 Protein in Direct Alkylation Repair’, Journal of Biological Chemistry., 289(52):35939-52, 2014.

K.W. Schicker, E. Novikova, B. Pohn, T. Stockner, C. Kugler, A. Singh, C. Zeitz, M.E. Lancelot, I. Audo, B.P. Leroy, M. Freissmuth, S. Herzig, J. Matthes and A. Koschak, ‘Spectrum of Cav1.4 dysfunction in congenital stationary night blindness type 2. V. Burtscher’, Biochim Biophys Acta. Aug: 1883 (8):2053-65, 2014.

G. Shivange, N. Kodipelli R. Anindya, ‘A nonradioactive restriction enzyme mediated assay to detect DNA repair dioxygenase’, Anal Biochem., 465C:35- 37, 2014.

T. Hong, H. Yang, S.S. Zhang, H.C. Cho, M. Kalashnikova, B. Sun, H. Zhang, A. Bhargava, M. Grabe, J. Olgin, J. Gorelik, E. Marban, L R. M. Shaw, ‘Cardiac BIN1 folds T-tubule membrane, controlling ion flux and li miting arrhythmia’, Nat Med. Jun; 20 (6):624-32, 2014.

T. Rathinavelan, M. Lara-Tejero, M. Lefebre, S. Chatterjee, A.C. McShan, D.C. Guo, C. Tang, J.E. Galan and R.N. De Guzman, ‘NMR model of PrgI-SipD interaction and its implications in the needle-tip assembly of the Salmonella type III secretion system’, J. Mol. Biol., 426, 2958-2969, 2014.